Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs28624980 chr17:46106078 G/A 7.72E-10 284 25.67 25.6 9 KM Plot
KIRP rs28653507 chr16:73746381 C/A 8.39E-5 280 26.37 20.8 12.28 KM Plot
KIRP rs28666845 chr7:44077439 G/A 0 284 25.62 26.28 2.9 KM Plot
KIRP rs28668417 chr19:55682468 G/A 2.04E-6 285 26.38 22.02 10.83 KM Plot
KIRP rs28671096 chr4:37688868 T/A 3.22E-6 282 25.57 31.13 16.45 KM Plot
KIRP rs28673672 chr4:37692056 C/T 4.57E-6 288 25.57 29.87 16.45 KM Plot
KIRP rs28680748 chr16:47976859 G/A 5.98E-6 283 26.2 25.13 7.73 KM Plot
KIRP rs28709043 chr7:44077448 G/A 0 284 25.62 26.28 2.9 KM Plot
KIRP rs28715668 chr5:176699268 T/C 2.21E-5 287 11.35 25.7 25.97 KM Plot
KIRP rs28715881 chr2:162020386 T/C 1.95E-12 289 26.37 21.97 8.47 KM Plot
KIRP rs28720066 chr19:19572220 G/T 5.0E-5 289 25.02 26.77 8.98 KM Plot
KIRP rs28884510 chr5:156439697 C/A 6.75E-6 287 13.05 22.57 26.4 KM Plot
KIRP rs28932178 chr5:176637576 T/C 2.08E-8 285 25.97 24.67 4.93 KM Plot
KIRP rs2896622 chr11:20963592 A/T 1.29E-5 289 25.57 30.8 19.58 KM Plot
KIRP rs2898653 chr15:64421302 G/T 0.000104 288 18.03 24.8 28.03 KM Plot